
Tools deployed by IFB platforms
-
3SRP Pipeline
2 Associated keyword(s)- NGS data analysis
- Transcriptomics (RNA-seq)
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
ACD Tools 2.0
1 Associated keyword(s)- Biostatistics
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
ACNUC
3 Associated keyword(s)- Information and communication technology developments
- Data
- Databases and information systems
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
ActivCollector
1 Associated keyword(s)- No relevant terms in the list above
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
ADE-4
4 Associated keyword(s)- Biostatistics
- Multivariate analysis
- Ecology
- Microbial ecology
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
AGMIAL
3 Associated keyword(s)- Genomics (DNA-seq)
- Genome analysis
- Structural and functional genome annotation
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
Ant-Motifs
2 Associated keyword(s)- Sequence analysis
- Structural bioinformatics
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
Askomics
5 Associated keyword(s)- NGS data analysis
- Integration of heterogeneous data
- Knowledge representation
- Ontologies
- Semantic Web
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
Aureme
4 Associated keyword(s)- Integration of heterogeneous data
- System biology
- Metabolic network modelling
- Metabolic network analysis
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
Autograph
4 Associated keyword(s)- Sequence analysis
- Homology/Orthology prediction
- Comparative genomics
- Genome comparison
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
BCSearch
2 Associated keyword(s)- Structural bioinformatics
- Structure analysis, homologous and structural motifs discovery
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
BioMAJ
2 Associated keyword(s)- Data
- Data management and transfer
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
BioMAJ2Galaxy
2 Associated keyword(s)- Data management and transfer
- Databases and information systems
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
BioNJ
3 Associated keyword(s)- Evolution and phylogeny
- Molecular evolution
- Genes and genomes
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
BioShaDock
6 Associated keyword(s)- Information and communication technology developments
- Tools
- Tool integration
- Computing environments
- Cluster
- Cloud
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
Cadbiom
3 Associated keyword(s)- System biology
- Regulatory network modelling
- System modelling
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
Carnac
1 Associated keyword(s)- Sequence analysis
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
Caspo
3 Associated keyword(s)- System biology
- System modelling
- Dynamic systems
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
CesGO
6 Associated keyword(s)- Information and communication technology developments
- Tool integration
- Interfaces, web portals
- Data integration
- Data management and transfer
- Databases and information systems
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
Clust&See
3 Associated keyword(s)- System biology
- Complex biological systems functions
- Multi-layer analysis and modelling
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
CompPhy
5 Associated keyword(s)- Evolution and phylogeny
- Molecular evolution
- Genes and genomes
- Phylogenomics
- Supertrees et reconciliations
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
CRAC
1 Associated keyword(s)- NGS data analysis
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
CRAC
4 Associated keyword(s)- NGS data analysis
- Transcriptomics (RNA-seq)
- Differential gene expression analysis
- Transcripts and transcript variants analysis
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
DEPIB
2 Associated keyword(s)- NGS data analysis
- Transcriptomics (RNA-seq)
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
DiNAMO
1 Associated keyword(s)- Sequence analysis
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
DroPNet
2 Associated keyword(s)- Bioimaging
- Proteomics
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
e-BGO
2 Associated keyword(s)- Interfaces, web portals
- Databases and information systems
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
ESPript/ENDscript
5 Associated keyword(s)- Sequence analysis
- (multiple) Sequence Alignment
- Sequence motif discovery
- Structural bioinformatics
- Structure analysis, homologous and structural motifs discovery
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
FastME
3 Associated keyword(s)- Evolution and phylogeny
- Molecular evolution
- Genes and genomes
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
fpocket
2 Associated keyword(s)- Structural bioinformatics
- Structural property prediction
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
Frog2
2 Associated keyword(s)- Structural bioinformatics
- Structural property prediction
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
GalaxEast
1 Associated keyword(s)- NGS data analysis
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
Galaxy@CBiB
2 Associated keyword(s)- NGS data analysis
- Sequence analysis
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
GATB
10 Associated keyword(s)- NGS data analysis
- Methodology
- Genome and transcriptome assembly
- Read mapping
- Variant calling
- Exomes
- Whole genomes
- Metagenomics, metatranscriptomics
- Sequence analysis
- Sequence algorithmics
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
Geno3D@
4 Associated keyword(s)- Structural bioinformatics
- Structure analysis, homologous and structural motifs discovery
- Structural property prediction
- Structure comparative and de novo modelling
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
GIGWA
6 Associated keyword(s)- Genomics (DNA-seq)
- Variant calling
- Tool integration
- Interoperability
- Interfaces, web portals
- Databases and information systems
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
GO-Docker
4 Associated keyword(s)- Information and communication technology developments
- Computing environments
- Cluster
- Cloud
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
GO2Pub
6 Associated keyword(s)- Integration of heterogeneous data
- Ontologies
- Information and communication technology developments
- Data
- Data integration
- Databases and information systems
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
GoArrays
1 Associated keyword(s)- NGS data analysis
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
Hex
2 Associated keyword(s)- Structural bioinformatics
- Structural property prediction
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
HexServer
2 Associated keyword(s)- Structural bioinformatics
- Structural property prediction
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
HHalign-Kbest
2 Associated keyword(s)- Structural bioinformatics
- Structure comparative and de novo modelling
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
HiSpOD
2 Associated keyword(s)- Sequence analysis
- Genomics: Chips
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
Integron Finder
2 Associated keyword(s)- Sequence annotation
- Sequence motif discovery
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
InterEvDock2
2 Associated keyword(s)- Structural bioinformatics
- Structure comparative and de novo modelling
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
KASpOD
2 Associated keyword(s)- Sequence analysis
- Genomics: Chips
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
Kpax
2 Associated keyword(s)- Structure analysis, homologous and structural motifs discovery
- Structure comparative and de novo modelling
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
leBiBI
2 Associated keyword(s)- NGS data analysis
- Metagenomics, metatranscriptomics
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
Logol
2 Associated keyword(s)- Sequence analysis
- Sequence motif discovery
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
LoRDEC
5 Associated keyword(s)- NGS data analysis
- Methodology
- Read mapping
- Genomics (DNA-seq)
- Transcriptomics (RNA-seq)
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
LSD
1 Associated keyword(s)- Speciation dating
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
macsyfinder
2 Associated keyword(s)- Sequence analysis
- Sequence annotation
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
MEMHDX
2 Associated keyword(s)- Biostatistics
- Interfaces, web portals
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
MICADo
3 Associated keyword(s)- NGS data analysis
- Methodology
- Variant calling
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
MicroAnnot
1 Associated keyword(s)- Sequence analysis
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
MicroScope
33 Associated keyword(s)- NGS data analysis
- Read mapping
- Genomics (DNA-seq)
- Genome analysis
- Structural and functional genome annotation
- Transcriptomics (RNA-seq)
- Differential gene expression analysis
- Variant calling
- Whole genomes
- Metagenomics, metatranscriptomics
- Sequence analysis
- Sequence algorithmics
- (multiple) Sequence Alignment
- Sequence annotation
- Sequence motif discovery
- Homology/Orthology prediction
- System biology
- Metabolic network modelling
- Tools
- Tool integration
- Interoperability
- Interfaces, web portals
- Workflows developments
- Data
- Data integration
- Data management and transfer
- Databases and information systems
- Computing environments
- Cluster
- Parallelisation
- Comparative genomics
- Genome comparison
- Comparison of functional and regulatory pathways
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
microSysMics
1 Associated keyword(s)- Metagenomics, metatranscriptomics
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
Minia
5 Associated keyword(s)- NGS data analysis
- Methodology
- Genome and transcriptome assembly
- Sequence analysis
- Sequence algorithmics
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
MIX
2 Associated keyword(s)- NGS data analysis
- Methodology
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
Mobyle
9 Associated keyword(s)- Information and communication technology developments
- Tools
- Tool integration
- Interoperability
- Interfaces, web portals
- Data
- Data integration
- Computing environments
- Cluster
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
MPscan
3 Associated keyword(s)- NGS data analysis
- Methodology
- Read mapping
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
MSDA
1 Associated keyword(s)- Proteomics
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
MTiAutoDock/MTiOpenScreen
4 Associated keyword(s)- Structural bioinformatics
- Virtual screening
- Small chemical compounds libraries, 2D/3D, ADME/tox
- Structure-based screening
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
NGS-QC Generator
1 Associated keyword(s)- NGS data analysis
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
NPS@
8 Associated keyword(s)- Sequence analysis
- Sequence algorithmics
- (multiple) Sequence Alignment
- Sequence annotation
- Sequence motif discovery
- Homology/Orthology prediction
- Structural bioinformatics
- Structural property prediction
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
Nucbase
1 Associated keyword(s)- No relevant terms in the list above
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
NucleusJ
1 Associated keyword(s)- No relevant terms in the list above
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
OCG
2 Associated keyword(s)- Complex biological systems functions
- Multi-layer analysis and modelling
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
ORDO
13 Associated keyword(s)- Machine learning
- Knowledge extraction
- Integration of heterogeneous data
- Knowledge representation
- Ontologies
- Semantic Web
- Data curation
- Information and communication technology developments
- Tools
- Tool integration
- Data
- Data integration
- Databases and information systems
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
OrthoInspector
1 Associated keyword(s)- Sequence analysis
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
PANAM
1 Associated keyword(s)- No relevant terms in the list above
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
PanGeneHome
3 Associated keyword(s)- Sequence analysis
- Evolution and phylogeny
- Comparative genomics
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
PEP-FOLD
2 Associated keyword(s)- Structural bioinformatics
- Structure comparative and de novo modelling
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
PepPSY
3 Associated keyword(s)- Homology/Orthology prediction
- Comparison of functional and regulatory pathways
- Proteogenomics
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
PepTeam
3 Associated keyword(s)- Sequence analysis
- Sequence algorithmics
- Sequence motif discovery
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
PhylArray
1 Associated keyword(s)- No relevant terms in the list above
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
phylogeny.fr
3 Associated keyword(s)- Evolution and phylogeny
- Molecular evolution
- Genes and genomes
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
Phylogeny.fr/ Blast-Explorer
3 Associated keyword(s)- Sequence analysis
- Evolution and phylogeny
- Comparative genomics
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
PhyML
3 Associated keyword(s)- Evolution and phylogeny
- Molecular evolution
- Genes and genomes
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
PhySIC_IST
3 Associated keyword(s)- Evolution and phylogeny
- Phylogenomics
- Supertrees et reconciliations
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
PipeAlign
1 Associated keyword(s)- Sequence analysis
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
proteINSIDE
2 Associated keyword(s)- Comparative genomics
- Proteomics
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
Protomata
4 Associated keyword(s)- Sequence analysis
- (multiple) Sequence Alignment
- Sequence motif discovery
- Homology/Orthology prediction
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
QOD
2 Associated keyword(s)- Comparative genomics
- Genome comparison
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
RAP-GREEN
3 Associated keyword(s)- Evolution and phylogeny
- Molecular evolution
- Phylogenomics
- Value not provided
- Value not provided
Value not providedValue not providedValue not provided -
Regulatory Sequence Analysis Tools (RSAT)
6 Associated keyword(s)- Genomics (DNA-seq)
- Chip-seq