Training type: 
Formation professionnelle
Description: 
This course offers an introduction to metabarcoding analyses at two different levels/steps: bioinformatics with FROGS pipeline in the Galaxy environment, biostatistics with PhyloSeq R package. This includes preprocessing, clustering and OTU picking, taxonomic assignation, estimation of diversity, visualization of statistics results.

Prerequisites

Galaxy, R knowledge

Program

  • Introduction to metagenomics and metabarcoding
  • Pre-processing, Clustering, taxonomic affiliation (FROGS)
  • Handling and visualizing OTU table using PhyloSeq R package (PhyloSeq)

Learning objectives

  • Manipulate tools available for metabarcoding analysis
  • Study sample diversity by using NGS and post-NGS analysis tools
  • Visualize diversity metrics in metabarcoding approach​

Instructors

 

recurrency: 
Oui
Date de la session: 
Monday, April 23, 2018 (All day)
Lieu de la formation: 
Centre IRD, Montpellier
Cours résumé: 
This course offers an introduction to metabarcoding analyses at two different levels (FROGS pipeline, PhyloSeq R package).
Date de la session: 
Tuesday, December 18, 2018
Nombre de jours: 
1.00
Nombre de participants académiques: 
10
Opérateur de la formation: 
South green Platform
Participation: 
Gratuite
Taux de satisfaction des apprenants: 
85%
Organisateurs: 
South Green Platform
cea
cnrs
inrae
inserm
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