
PACA-Bioinfo
- Information
- Infrastructure
- Data
- Tools
- Expertise
- Trainings
- Collaborations
- Ouverture
- Imports
- Gerer mes utilisateurs
Adress
Structure(s)
Unit:
Website
PACA BioinfoScientific leader(s)
Technical leader(s)
Certificat(s)
- Label IBiSA
- CATI / CTAI
![]() Annual visits: 8 982 an
Unique visits: Not documented
Quotes: Not documented
Latest update: 02-01-2019
Gbrowse virus géantsDescriptionGenomes références des principaux virus géants Access conditionsLibre accès |
![]() Annual visits: 800 000 an
Unique visits: 100 000 an
Quotes: 2 200
Downloads: Not documented
Phylogeny.fr/ Blast-ExplorerDescriptionRobust Phylogenetic Analysis For The Non-Specialist Access conditionsGratuit |
![]() No website documentedAnnual visits: 11 271 an
Unique visits: Not documented
Quotes: 315
Downloads: Not documented
TcoffeeDescriptionAccess conditionsGratuit |
![]() Annual visits: Not documented
Unique visits: Not documented
Quotes: 1 900
Downloads: Not documented
ACD Tools 2.0DescriptionA web-server for the generic analysis of large data sets of counts Access conditionsGratuit |
Domains of activity
- Biomedical
- Biotechnology
- Environment
Description of expertise domains
Génomique procaryote et virale. Transcriptomique. Métagénomique. Protéomique. Biologie Structurale (EM and X-ray crystallography)
Keywords:
- NGS data analysis
- Sequence analysis
- Structural bioinformatics
- Biostatistics
- Cartography
- Evolution and phylogeny
- Comparative genomics
- Proteomics
- No relevant terms in the list above
Formation professionnelle
![]() No website documentedTrainees: 3 trainees / year
Training time: Not documented
No upcoming session scheduled
Projet AMIDEX "spongex"DescriptionNot documentedAccess conditionsAccès en local aux différents clusters |
Formation universitaire
![]() No website documentedTrainees: 2 trainees / year
Training time: Not documented
No upcoming session scheduled
Master STIC pour la SantéDescriptionNot documentedAccess conditionsAccès en local aux différents clusters |
Internal publications
External publications
Publications with the hosting laboratory
Legendre M, et al. (2018). Diversity and evolution of the emerging Pandoraviridae family. Nat Commun. 9(1):2285. doi: 10.1038/s41467-018-04698-4. PubMed PMID: 29891839; PubMed Central PMCID: PMC5995976.
Belahbib H, Renard E, Santini S, Jourda C, Claverie JM, Borchiellini C, Le Bivic A. New genomic data and analyses challenge the traditional vision of animal epithelium evolution. BMC Genomics. 2018 May 24;19(1):393. doi: 10.1186/s12864-018-4715-9. PubMed PMID: 29793430;
Users distribution
Explanation about this distribution:
Approximativement 50% internationaux.
Pas de traçabilité régionale/locale.
Platform's own projects
Nouvelle technologie de séquençage, long read • Oxford Nanopore Technologies Ltd • Oxford Science Park, Oxford, UK. OX4 4GA • Nouvelle techniques de prospections des bases de données à l'aide de l'information phylogénétique (Pplacer+)
Collaborations
National projets
Tara-Oceans, Permagenomics (France-Génomique), Spongex (IDEX-AMU).
International and European projects
Tara-Oceans, Oceanomics, MicroB3, BioMarks
Projects with industry
Oceanomics, MicroB3
Collaboration projects not founded through an external organism
Provision of services not founded through an external organism
Animations (Workshops, Work-groups, seminars, conferences ... )
EMBO Practical course: Bioinformatics and genomes analyses (Athène, 5-17 mai 2014).
(chaque année: 2012: Casablanca, 2013: La Réunion).