

PRABI-AMSB
- Information
- Infrastructure
- Data
- Tools
- Expertise
- Trainings
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Adress
Structure(s)
Unit:
Website
PRABI-AMSBScientific leader(s)
Technical leader(s)
Certificat(s)
- France-Génomique
- Label IBiSA
Infrastructure
Effective storage
Cluster: cores number
CPU/hours a year
Bioinformatic tools number
Users number (last year)
Servers description
Access conditions
FR BioEEnvis members and/or collaboration with PRABI-AMSB - PRABI-LBBE.
![]() Annual visits: Not documented
Unique visits: Not documented
Quotes: Not documented
Latest update: 01-03-2020
VirHostNet 2.0DescriptionUne base de données dédiée à la biocuration et à l'intégration des interactions protéine-protéine virus/hôte. Access conditions |
Domains of activity
- Environment
- Biology
Description of expertise domains
Les domaines de compétences du PRABI-AMSB comprennent la phylogénie moléculaire, les statistiques, l’écologie, la virologie et la microbiologie ainsi que l’analyse de données biomédicales. Par ailleurs les méthodologies utilisées sont celles de la génomique, la transcriptomique, la métagénomique/métatranscriptomique, ainsi que la biologie des systèmes.
Keywords:
- NGS data analysis
- Methodology
- Genome and transcriptome assembly
- Genomics (DNA-seq)
- Genome analysis
- Transcriptomics (RNA-seq)
- Differential gene expression analysis
- Transcripts and transcript variants analysis
- Variant calling
- Whole genomes
- Metagenomics, metatranscriptomics
- Sequence analysis
- Sequence algorithmics
- (multiple) Sequence Alignment
- Sequence annotation
- Sequence motif discovery
- Homology/Orthology prediction
- System biology
- Complex biological systems functions
- Regulatory network modelling
- System modelling
- Biostatistics
- Descriptive statistics
- Statistical tests
- Regression
- Multivariate analysis
- Dimension reduction
- Data curation
- Information and communication technology developments
- Tools
- Interfaces, web portals
- Workflows developments
- Data
- Databases and information systems
- Cluster
- Cloud
- Parallelisation
- Ecology
- Biodiversity
- Microbial ecology
- Modelling in ecology
- Evolution and phylogeny
- Molecular evolution
- Genes and genomes
- Phylogenomics
- Tree of life
- Supertrees et reconciliations
- Selection detection
- Comparative genomics
- Genome comparison
- Genomics: Chips
- Metabolomics and fluxomics
Formation professionnelle
![]() Trainees: 10 trainees / year
Training time: 3 day(s) / year
Upcoming session : 18-10-2017
Introduction au logiciel RDescription
Objectifs de la formation
Access conditionsInformations et inscriptions: http://www.biosciencesco.fr/formation-continue/bio-informatique/formation-au-logiciel-r/
|
![]() Trainees: 12 trainees / year
Training time: Not documented
Upcoming session : 15-11-2017
Analyse de données RNA-seq sous l’environnement GalaxyDescription
Objectifs de la formation
Durée de la formation : 2,5 jours Access conditionsInformations et inscriptions: http://www.biosciencesco.fr/formation-continue/bio-informatique/analyse-... |
Internal publications
External publications
Publications with the hosting laboratory
Acknowledgement
Users distribution
Explanation about this distribution:
Platform's own projects
Not Documented