ABiMS

Cátia Monteiro and Sandra Heinrich and Inka Bartsch and Klaus Valentin and Erwan Corre and Jonas Collén and Lars Harms and Gernot Glöckner and Kai Bischof; Temperature Modulates Sex-Biased Gene Expression in the Gametophytes of the Kelp Saccharina latissima, Frontiers in Marine Science 2019; 6 doi: 10.3389/fmars.2019.00769.

Elham Karimi and Enora Geslain and Hetty KleinJan and Gwenn Tanguy and Erwan Legeay and Erwan Corre and Simon M Dittami; Genome Sequences of 72 Bacterial Strains Isolated from Ectocarpus subulatus: A Resource for Algal Microbiology, Genome Biology and Evolution 2019; 12(1) doi: 10.1093/gbe/evz278.

Nègre and  Aite and  Belcour and  Frioux and  Brillet-Guéguen and  Liu and  Bordron and  Godfroy and  Lipinska and  Leblanc and  Siegel and  Dittami and  Corre and  Markov; Genome–Scale Metabolic Networks Shed Light on the Carotenoid Biosynthesis Pathway in the Brown Algae Saccharina japonica and Cladosiphon okamuranus, Antioxidants 2019; 8(11) doi: 10.3390/antiox8110564.

Annie Lebreton and Erwan Corre and Jean-Luc Jany and Loraine Brillet-Guéguen and Carlos Pèrez-Arques and Victoriano Garre and Misharl Monsoor and Robert Debuchy and Christophe Le Meur and Emmanuel Coton and Georges Barbier and Laurence Meslet-Cladière; Comparative genomics applied to Mucor species with different lifestyles, BMC Genomics 2020; 21(1) doi: 10.1186/s12864-019-6256-2.

Cátia Marina Machado Monteiro and Huiru Li and Kai Bischof and Inka Bartsch and Klaus Ulrich Valentin and Erwan Corre and Jonas Collén and Lars Harms and Gernot Glöckner and Sandra Heinrich; Is geographical variation driving the transcriptomic responses to multiple stressors in the kelp Saccharina latissima?, BMC Plant Biology 2019; 19(1) doi: 10.1186/s12870-019-2124-0.

Marjorie Couton and Thierry Comtet and Sabrina Le Cam and Erwan Corre and Frédérique Viard; Metabarcoding on planktonic larval stages: an efficient approach for detecting and investigating life cycle dynamics of benthic aliens, Management of Biological Invasions 2019; 10(4) doi: 10.3391/mbi.2019.10.4.06.

Alexandra Rahmani and Erwan Corre and Gaëlle Richard and Adeline Bidault and Christophe Lambert and Louisi Oliveira and Cristiane Thompson and Fabiano Thompson and Vianney Pichereau and Christine Paillard; Transcriptomic analysis of clam extrapallial fluids reveals immunity and cytoskeleton alterations in the first week of Brown Ring Disease development, Fish & Shellfish Immunology 2019; 93 doi: 10.1016/j.fsi.2019.08.025.

Huiru Li and Cátia Monteiro and Sandra Heinrich and Inka Bartsch and Klaus Valentin and Lars Harms and Gernot Glöckner and Erwan Corre and Kai Bischof; Responses of the kelp Saccharina latissima (Phaeophyceae) to the warming Arctic: from physiology to transcriptomics, Physiologia Plantarum 2019; 168(1) doi: 10.1111/ppl.13009.

François Thomas and Erwan Corre and Aurélie Cébron; Stable isotope probing and metagenomics highlight the effect of plants on uncultured phenanthrene-degrading bacterial consortium in polluted soil, The ISME Journal 2019; 13(7) doi: 10.1038/s41396-019-0394-z.

Laure Arsenieff and Nathalie Simon and Fabienne Rigaut-Jalabert and Florence Le Gall and Samuel Chaffron and Erwan Corre and Emmanuelle Com and Estelle Bigeard and Anne-Claire Baudoux; First Viruses Infecting the Marine Diatom Guinardia delicatula, Frontiers in Microbiology 2019; 9 doi: 10.3389/fmicb.2018.03235.

I. Rombouts and N. Simon and A. Aubert and T. Cariou and E. Feunteun and L. Guérin and M. Hoebeke and A. McQuatters-Gollop and F. Rigaut-Jalabert and L.F. Artigas; Changes in marine phytoplankton diversity: Assessment under the Marine Strategy Framework Directive, Ecological Indicators 2019; 102 doi: 10.1016/j.ecolind.2019.02.009.

Mohsen Kayal and Hannah Lewis and Jane Ballard and Ehsan Kayal; Humanity and the 21 st century's resource gauntlet: a commentary on Ripple et al.'s article “World scientists' warning to humanity: a second notice”, Rethinking Ecology 2019; 4 doi: 10.3897/rethinkingecology.4.32116.

Aki Ohdera and Cheryl L Ames and Rebecca B Dikow and Ehsan Kayal and Marta Chiodin and Ben Busby and Sean La and Stacy Pirro and Allen G Collins and Mónica Medina and Joseph F Ryan; Box, stalked, and upside-down? Draft genomes from diverse jellyfish (Cnidaria, Acraspeda) lineages: Alatina alata (Cubozoa), Calvadosia cruxmelitensis (Staurozoa), and Cassiopea xamachana (Scyphozoa), GigaScience 2019; 8(7) doi: 10.1093/gigascience/giz069.

Simon M Dittami and Enrique Arboleda and Jean-Christophe Auguet and Arite Bigalke and Enora Briand and Paco Cardenas and Ulisse Cardini and Johan Decelle and Aschwin H Engelen and Damien Eveillard and Claire M.M. Gachon and Sarah M Griffiths and Tilmann Harder and Ehsan Kayal and Elena Kazamia and François H Lallier and Mónica Medina and Ezequiel Marzinelli and Teresa Morganti and Laura Núñez Pons and Soizic Prado and José Pintado and Mahasweta Saha and Marc-André Selosse and Derek Skillings and Willem Stock and Shinichi Sunagawa and Eve Toulza and Alexey Vorobev and Catherine Leblanc and Fabrice Not; A community perspective on the concept of marine holobionts: current status, challenges, and future directions, PeerJ 2019;  doi: 10.7287/peerj.preprints.27519v3.

Toullec J-Y, Corre E, Bernay B, Thorne MAS, Cascella K, et al. (2013) Transcriptome and Peptidome Characterisation of the Main Neuropeptides and Peptidic Hormones of a Euphausiid: The Ice Krill, Euphausia crystallorophias. PLoS ONE 8(8): e71609. doi:10.1371/journal.pone.0071609

Janouškovec J, Liu SL, Martone PT, Carré W, Leblanc C, Collén J, Keeling PJ. 2013.Evolution of red algal plastid genomes: ancient architectures, introns, horizontal gene transfer, and taxonomic utility of plastid markers.PLoS One. 2013;8(3):e59001. doi: 10.1371/journal.pone.0059001. Epub 2013 Mar 25.

Collén J., Porcel B., Carré W., Ball S., Chaparro C., Tonon T., Barbeyron T., Michel G., Noel B., Valentin K., Elias M., Artiguenave F., Arun A., Aury J.M., Barbosa-Neto J.F., Bothwell J.H., Bouget F.Y., Brillet L., Cabello-Hurtado F., Capella-Gutíerrez S., Charrier B., Cladière L., Cock J.M., Coelho S.M., Colleoni C., Czjzek M., Da Silva C., Delage L., Denoeud F., Deschamps P., Dittami S.M., Gabaldón T., Gachon C.M., Groisillier A., Hervé C., Jabbari K., Katinka M., Kloareg B., Kowalczyk N., Labadie K., Leblanc C., Lopez P.J., McLachlan D., Meslet-Cladiere L., Moustafa A., Nehr Z., Nyvall Collén P., Panaud O., Partensky F., Poulain J., Rensing S.A., Rousvoal S., Samson G., Symeonidi A., Weissenbach J., Zambounis A., Wincker P., Boyen C. 2013, Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida. Proc Natl Acad Sci U S A. 2013 Mar 26;110(13):5247-52. doi: 10.1073/pnas.1221259110.

Sophia Ahmed, J Mark Cock, Eugenie Pessia, Remy Luthringer, Alexandre Cormier, Marine Robuchon, Lieven Sterck, Akira F Peters, Simon M Dittami, Erwan Corre, Myriam Valero, Jean-Marc Aury, Denis Roze, Yves Van de Peer, John Bothwell, Gabriel A B Marais, Susana M Coelho (2014). A Haploid System of Sex Determination in the Brown Alga Ectocarpus sp. Current Biology : CB, 24(17), 1945–1957.

Godard, B. G., Coolen, M., Le Panse, S., Gombault, A., Ferreiro-Galve, S., Laguerre, L., Ronan Lagadec, Patrick Wincker, Julie Poulain, Corinne Da Silva, Shigehiro Kuraku, Wilfrid Carre, Agnes Boutet and Sylvie Mazan. (2014). Mechanisms of endoderm formation in a cartilaginous fish reveal ancestral and homoplastic traits in jawed vertebrates. Biology Open, 3(11), 1098–1107. doi:10.1242/bio.20148037

Kevin Cascella, Didier Jollivet, Claire Papot, Nelly Léger, Erwan Corre, Juliette Ravaux, Melody S. Clark and Jean-Yves Toullec.2014 Diversification, evolution and sub-functionalization of 70kDa heat-shock proteins in two sister species of Antarctic krill: Differences in thermal habitats, responses and implications under climate change.  PLoS One. 10(4):e0121642

Gregory K Farrant, Mark Hoebeke, Frédéric Partensky, Gwendoline Andres, Erwan Corre and Laurence Garczarek. WiseScaffolder: an algorithm for the semi-automatic scaffolding of Next Generation Sequencing data. BMC Bioinformatics. 2015; 16(1): 281.  doi: 10.1186/s12859-015-0705-y

Simon M. Dittami, Laëtitia Duboscq-Bidot, Morgan Perennou, Angélique Gobet, Erwan Corre, Catherine Boyen, Thierry Tonon. Host-microbe interactions as a driver of brown algal acclimation to salinity gradients. The ISME Journal , (26 June 2015) | doi:10.1038/ismej.2015.104

Lipinska A, Cormier A, Luthringer R, Peters AF, Corre E, Gachon CMM, Cock JM, Coelho SM. 2014. Sexual dimorphism and the evolution of sex-biased gene expression in the brown alga Ectocarpus. Mol Biol Evol. 2015 Jun;32(6):1581-97

Dominique Boeuf; Stephane Audic; Loraine Brillet-Gueguen; Christophe Caron; Christian Jeanthon. 2015. MicRhoDE: a curated database for the analysis of microbial rhodopsin diversity and evolution Database 2015; doi: 10.1093/database/bav080

James E. Tarver, Alexandre Cormier, Natalia Pinzón, Richard S. Taylor, Wilfrid Carré, Martina Strittmatter, Hervé Seitz, Susana M. Coelho and J. Mark Cock. microRNAs and the evolution of complex multicellularity: identification of a large, diverse complement of microRNAs in the brown alga Ectocarpus. Nucl. Acids Res. (27 July 2015) 43 (13): 6384-6398.; doi: 10.1093/nar/gkv578

Sergio Balzano, Erwan Corre, Johan Decelle, Roberto Sierra, Patrick Wincker, Corinne Da Silva,  Julie Poulain, Jan Pawlowski, Fabrice Not. Transcriptome analyses to investigate symbiotic relationships between marine protists. Front Microbiol. 2015 Mar 17;6:98, section Microbial Physiology and Metabolism